Our NetworkAnalyst 3.0 manuscript is accepted by Nucleic Acids Research! ( ) Īdded support for WormBase ID for C. Updated KEGG pathways for all 17 species ( ) įixed the issue with PCA 3D visual analytics ( ) įixed the issue with DE analysis for species not in the list of 17 organisms ( ) Updated web framework to PrimeFaces 7.0 ( )
Ortholog layout in cytoscape download#
Volcano plot now supports enrichment analysis against user defined gene sets ( ) įixed the broken link in meta-analysis result download page ( ) īug fixes - GSEA and uploading multiple list files are working now ( ) Įnhanced graphML parsing for network file upload ( ) Updated R from 3.5.1 to the latest version (3.6.1) ( ) The Current Selection panel in Network View page show Fold Change (FC) values for genes selected ( ) įixed broken link for project management (save/delete) ( ) Updated all gene ID annotation files based on the latest database (NCBI, Uniprot, StringDB and Biomart) ( ) Users can now apply reduce node overlap on a selected region of interest ( ) Īdded support for gradient background and bi/tripartite network layout ( ) Ĭonsolidated the interface for network selection and network tools ( ) Īdded cross-species PPI support between host and 15 parasites as well as host and microbiome( ) Īdded support for page sharing - click the to share interactive visual analytics results with your collaborators! ( ) Īdded support for the Human Reference Interactome (HuRI) map ( ) Īdded support for edge bundling in 2D network view ( ) Īdded support for functional analysis for users upload network files ( ) įixed the issue with InnateDB ID mapping ( ) Īdded support for colorblind-friendly schema in network and heatmap visualization ( ) Users can now create integrated networks by selecting several types of network databases during network creation ( ) Updated rainbow trout annotation based on the new release ( ) Īdded common network topology measures in the Network Builder page ( ) įixed node size issue for enrichment networks ( ) Īdded NCBI annotation support for fathead minnow ( ) įixed several issues with tools for network customization ( ) įixed SVG export issue for enrichment network analysis ( ) Įnhanced support for enrichment network visualization ( ) Įnhanced support for several important species in ecology (rainbow trout, fathead minnow, Japanese quail, African clawed frog, and northern leopard frog) ( ) Įnhanced network and volcano plot visualization ( ) įixed issue with PNG export for networks ( ) įixed the issue with uploading data with unspecified ID in the meta-analysis module ( ) Migrating raw RNAseq processing from Galaxy to EcoOmicsAnalyst for better interface and support ( ) įixed issue for gene symbols display for fruit fly ( ) Įnhanced meta-analysis result table download based on user feedback ( ) įixed the issue with host-parasite and host-microbiome interaction dialog ( ) Users can now perform GO analysis for any non-model species profiled by Seq2Fun ( ) Īdded support for Seq2Fun output to enable streamlined analysis of gene expression data from any species ( ) NetworkAnalyst is reserved for knowledge-driven network analysis from a gene list ( ) Ĭode cleaning and interface enhancement ( ) įixed the issue associated with empty columns in the abundance table ( )
Official launch of ExpressAnalyst dedicated for gene expression profiling and meta-analysis. Replaced Chord diagram with Upset plot for summarizing meta-analysis results ( ) Īdded support for Mongolian gerbil (M. Replaced gene-level box plot with violin plot ( ) Īdded support for interactive ridge line plot ( ) Īdded support to show meta-analysis result in Volcano plot ( ) Switching from FAQs page to using OmicsForum ( ) Fixed the issue in data upload for meta-analysis ( )
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